STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c9h9orf78Chromosome 9 C9orf78 homolog. (291 aa)    
Predicted Functional Partners:
snrnp200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 
 0.933
prpf8
pre-mRNA processing factor 8.
    
 
 0.931
slu7
SLU7 homolog, splicing factor.
   
 
 0.917
med22
Mediator complex subunit 22.
   
  
 0.888
nkap
NFKB activating protein.
   
 
  0.859
cwc22
CWC22 spliceosome associated protein homolog.
    
 0.810
pfdn6
Prefoldin subunit 6.
   
    0.807
med18
Mediator complex subunit 18.
   
    0.807
fam50a
Family with sequence similarity 50 member A.
    
 0.800
LOC114434964
pre-mRNA-splicing factor 38A-like.
   
  
 0.789
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.