STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114436017Ataxin-7-like protein 2. (788 aa)    
Predicted Functional Partners:
taf12
TATA-box binding protein associated factor 12.
   
 0.976
ENSPRNP00000007907
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.975
LOC114445993
Transcription initiation factor TFIID subunit 9-like.
    
 0.975
LOC114437745
Ubiquitin carboxyl-terminal hydrolase 22.
    
 0.975
taf6
TATA-box binding protein associated factor 6.
   
 0.974
trrap
Transformation/transcription domain associated protein.
    
 0.974
tada3
Transcriptional adaptor 3.
    
 0.969
supt3h
SPT3 homolog, SAGA and STAGA complex component.
    
 0.969
supt20h
SPT20 homolog, SAGA complex component.
    
 0.964
sgf29
SAGA complex associated factor 29.
    
 0.951
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.