STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114436217Platelet endothelial cell adhesion molecule-like. (766 aa)    
Predicted Functional Partners:
LOC114447059
Cadherin-5-like.
   
 0.952
ctnnb1
Catenin beta 1.
   
 0.945
LOC114438443
Tyrosine-protein phosphatase non-receptor type 11-like.
   
 0.875
ptpn11
Protein tyrosine phosphatase non-receptor type 11.
   
 0.875
ptpn6
Protein tyrosine phosphatase non-receptor type 6.
   
 0.875
LOC114433584
Junction plakoglobin-like.
   
 0.784
LOC114440235
Junction plakoglobin-like.
   
 0.784
LOC114453840
Catenin beta-1-like.
   
 0.783
inpp5d
Inositol polyphosphate-5-phosphatase D.
    
 0.757
pdgfrb
Platelet derived growth factor receptor beta.
    
 0.742
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.