STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114439878Zinc finger BED domain-containing protein 1-like. (641 aa)    
Predicted Functional Partners:
asmtl
Acetylserotonin O-methyltransferase like.
   
 
 0.557
asmt
Acetylserotonin O-methyltransferase.
     
 0.490
LOC114427491
Acetylserotonin O-methyltransferase-like.
     
 0.490
ENSPRNP00000000633
Methyltransferase like 11B.
     
 0.455
ntmt1
N-terminal Xaa-Pro-Lys N-methyltransferase 1.
     
 0.455
mettl11b
Methyltransferase like 11B.
     
 0.455
LOC114440286
SUMO-conjugating enzyme UBC9-like.
    
  0.428
ube2i
Ubiquitin conjugating enzyme E2 I.
    
  0.428
kctd2
Potassium channel tetramerization domain containing 2.
    
  0.426
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.