STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ercc5ERCC excision repair 5, endonuclease. (1101 aa)    
Predicted Functional Partners:
ercc3
ERCC excision repair 3, TFIIH core complex helicase subunit.
   
 0.988
gtf2h1
General transcription factor IIH subunit 1.
    
 0.985
ercc2
ERCC excision repair 2, TFIIH core complex helicase subunit.
  
 0.982
ercc4
ERCC excision repair 4, endonuclease catalytic subunit.
   
 0.968
ercc6
ERCC excision repair 6, chromatin remodeling factor.
  
 0.965
msh6
mutS homolog 6.
  
 0.959
mlh1
mutL homolog 1.
  
 0.959
pcna
Proliferating cell nuclear antigen.
  
 0.957
msh2
mutS homolog 2.
  
 0.957
ercc1
ERCC excision repair 1, endonuclease non-catalytic subunit.
   
 0.955
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.