STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114432331Collagen alpha-1(VIII) chain-like. (340 aa)    
Predicted Functional Partners:
LOC114426045
Collagen alpha-2(VI) chain-like.
  
0.665
col6a2
Collagen type VI alpha 2 chain.
  
0.656
C1QC
Complement C1q subcomponent subunit C-like.
   
 
0.638
col6a1
Collagen type VI alpha 1 chain.
  
0.619
lig1
DNA ligase 1.
    
 0.605
ENSPRNP00000022529
Integrin, beta 8.
    
 0.604
rptor
Regulatory associated protein of MTOR complex 1.
    
 0.602
itgb4
Integrin subunit beta 4.
   
 0.593
itgb6
Integrin subunit beta 6.
    
 0.587
col8a2
Collagen type VIII alpha 2 chain.
  
  
 
0.582
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.