STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sec24aSEC24 homolog A, COPII coat complex component. (1129 aa)    
Predicted Functional Partners:
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
   
 0.996
LOC114434907
Protein transport protein Sec23A.
   
0.989
sec31a
SEC31 homolog A, COPII coat complex component.
   
 0.985
LOC114451491
Protein transport protein Sec31A-like.
   
 0.985
ENSPRNP00000009927
annotation not available
   
0.983
sec24d
SEC24 homolog D, COPII coat complex component.
   
0.983
sec24c
SEC24 homolog C, COPII coat complex component.
   
0.983
LOC114427344
Protein transport protein Sec23A.
   
0.979
LOC114427884
Protein transport protein Sec23A.
   
0.979
LOC114437418
Circularly permutated Ras protein 1-like.
   
 0.977
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.