STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CNMDChondromodulin. (317 aa)    
Predicted Functional Partners:
fjx1
Four-jointed box kinase 1.
   
 0.648
fat2
FAT atypical cadherin 2.
    
  0.614
fat1
FAT atypical cadherin 1.
    
  0.614
ctnna1
Catenin alpha 1.
    
 0.485
ctnna2
Catenin alpha 2.
    
 0.485
ctnnal1
Catenin alpha like 1.
    
 0.485
LOC114447211
Vinculin-like.
    
 0.485
LOC114451913
Vinculin.
    
 0.485
NCSTN
Nicastrin.
    
  0.476
hao1
Hydroxyacid oxidase 1.
   
 
 0.474
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.