STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rad21RAD21 cohesin complex component. (641 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes 3.
   
 0.986
smc1a
Structural maintenance of chromosomes 1A.
   
 0.968
LOC114451717
Structural maintenance of chromosomes protein 1B-like.
   
 0.968
LOC114453862
Cohesin subunit SA-2-like.
   
 0.949
LOC114445852
Cohesin subunit SA-2-like.
   
 0.949
espl1
Extra spindle pole bodies like 1, separase.
   
 0.939
pds5a
PDS5 cohesin associated factor A.
   
 0.932
pds5b
PDS5 cohesin associated factor B.
   
 0.932
smc5
Structural maintenance of chromosomes 5.
   
 0.930
LOC114443577
nipped-B-like protein.
   
 0.915
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.