STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smg9SMG9 nonsense mediated mRNA decay factor. (582 aa)    
Predicted Functional Partners:
smg8
SMG8 nonsense mediated mRNA decay factor.
    
 0.999
smg1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
    
 0.990
mtor
Mechanistic target of rapamycin kinase.
    
 0.940
smg5
SMG5 nonsense mediated mRNA decay factor.
   
 
 0.848
smg6
SMG6 nonsense mediated mRNA decay factor.
   
 
 0.842
smg7
SMG7 nonsense mediated mRNA decay factor.
   
 
 0.841
rbm8a
RNA binding motif protein 8A.
    
 
 0.803
LOC114448903
Proline-rich nuclear receptor coactivator 2-like.
     
 0.801
dcp1a
Decapping mRNA 1A.
     
 0.761
dcp1b
Decapping mRNA 1B.
     
 0.688
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.