STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpa1Replication protein A1. (640 aa)    
Predicted Functional Partners:
rpa3
Replication protein A3.
   
 0.993
blm
BLM RecQ like helicase.
   
 0.992
top3a
DNA topoisomerase III alpha.
  
 0.989
rad51
RAD51 recombinase.
  
 0.989
rmi1
RecQ mediated genome instability 1.
    
 0.987
smarcal1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1.
   
 0.985
rad52
RAD52 homolog, DNA repair protein.
    
 0.982
dna2
DNA replication helicase/nuclease 2.
    
 0.980
atr
ATR serine/threonine kinase.
    
 0.979
LOC114432317
Replication protein A 32 kDa subunit-like.
   
 0.974
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.