STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmub1Transmembrane and ubiquitin like domain containing 1. (245 aa)    
Predicted Functional Partners:
tmub2
Transmembrane and ubiquitin like domain containing 2.
  
 
 
0.694
LOC114441763
Erlin-2.
    
 
 0.684
LOC114447553
Erlin-1.
    
 
 0.684
LOC114443953
E3 ubiquitin-protein ligase RNF170-like.
    
 
 0.683
LOC114450656
Serine/threonine-protein kinase 4-like.
    
 0.674
LOC114430326
Serine/threonine-protein kinase 3.
    
 0.674
tmem259
Transmembrane protein 259.
    
 
 0.616
RNF5
Ring finger protein 5.
    
 
 0.575
rnf185
Ring finger protein 185.
    
 
 0.575
ENSPRNP00000028811
Chromosome 6 open reading frame 120.
      
 0.536
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.