STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lgi3Leucine rich repeat LGI family member 3. (558 aa)    
Predicted Functional Partners:
adam23
ADAM metallopeptidase domain 23.
     
 0.781
adam22
ADAM metallopeptidase domain 22.
     
 0.749
LOC114439578
Disintegrin and metalloproteinase domain-containing protein 11-like.
     
 0.714
C1QC
Complement C1q subcomponent subunit C-like.
   
  0.638
rptor
Regulatory associated protein of MTOR complex 1.
    
 0.602
mlst8
MTOR associated protein, LST8 homolog.
    
  0.582
det1
DET1 partner of COP1 E3 ubiquitin ligase.
    
  0.581
ENSPRNP00000042338
annotation not available
   
  0.577
hgfac
HGF activator.
    
  0.571
HABP2
Hyaluronan binding protein 2.
    
  0.571
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.