STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114426577Putative methyltransferase DDB_G0268948. (275 aa)    
Predicted Functional Partners:
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
  0.760
LOC114442737
Multifunctional methyltransferase subunit TRM112-like protein.
   
 0.722
ENSPRNP00000016425
Sigma non-opioid intracellular receptor 1.
   
 0.701
LOC114444201
Sigma non-opioid intracellular receptor 1.
   
 0.701
tsr1
TSR1 ribosome maturation factor.
   
  0.700
mrps5
Mitochondrial ribosomal protein S5.
    
 0.691
rps2
Ribosomal protein S2.
    
 0.691
bysl
Bystin like.
   
 0.690
LOC114434813
3-keto-steroid reductase-like.
    
 0.677
r3hdm4
R3H domain containing 4.
    
 0.677
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.