STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ess2Ess-2 splicing factor homolog. (510 aa)    
Predicted Functional Partners:
prpf19
pre-mRNA processing factor 19.
    
 0.944
xab2
XPA binding protein 2.
   
 0.924
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
    
  0.922
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
  0.906
snw1
SNW domain containing 1.
    
 0.893
crnkl1
Crooked neck pre-mRNA splicing factor 1.
     
 0.890
ccdc130
Coiled-coil domain containing 130.
    
 0.889
bud31
BUD31 homolog.
     
 0.883
prpf8
pre-mRNA processing factor 8.
     
 0.882
syf2
SYF2 pre-mRNA splicing factor.
    
  0.874
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.