STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab24RAB24, member RAS oncogene family. (204 aa)    
Predicted Functional Partners:
LOC114444463
Rab5 GDP/GTP exchange factor-like.
   
 0.967
rabgef1
RAB guanine nucleotide exchange factor 1.
   
 0.967
LOC114441349
Rab5 GDP/GTP exchange factor-like.
   
 0.967
appl2
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.
    
 
 0.902
appl1
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.
    
 
 0.902
rbsn
Rabenosyn, RAB effector.
   
 0.896
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.859
als2
Alsin Rho guanine nucleotide exchange factor ALS2.
    
 0.857
LOC114426112
Alsin-like.
    
 0.857
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.854
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.