STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ube2j1Ubiquitin conjugating enzyme E2 J1. (327 aa)    
Predicted Functional Partners:
ube2g2
Ubiquitin conjugating enzyme E2 G2.
   
0.927
ube2j2
Ubiquitin conjugating enzyme E2 J2.
    
0.898
c1qtnf12
C1q and TNF related 12.
    
 0.893
trip12
Thyroid hormone receptor interactor 12.
    
 0.892
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.883
LOC114439154
Ubiquitin-conjugating enzyme E2 variant 1-like.
   
 0.879
ube2v2
Ubiquitin conjugating enzyme E2 V2.
   
 0.879
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 
 0.873
prkn
Parkin RBR E3 ubiquitin protein ligase.
    
 0.870
LOC114453748
ranBP2-like and GRIP domain-containing protein 3.
   
 0.853
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.