STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPRNP00000033915POU class 2 homeobox 2a. (342 aa)    
Predicted Functional Partners:
pou2f3
POU class 2 homeobox 3.
  
  
 
0.805
ENSPRNP00000019196
annotation not available
    
 
 0.732
sp1
Sp1 transcription factor.
    
  0.729
LOC114437792
Histone acetyltransferase p300-like.
   
 0.701
znf143
Zinc finger protein 143.
    
  0.659
gtf2b
General transcription factor IIB.
    
 0.654
gtf2e1
General transcription factor IIE subunit 1.
    
  0.645
pcf11
PCF11 cleavage and polyadenylation factor subunit.
     
 0.622
snapc3
Small nuclear RNA activating complex polypeptide 3.
   
 
  0.621
polr3k
RNA polymerase III subunit K.
     
 0.620
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.