STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMD12Sterile alpha motif domain containing 12. (124 aa)    
Predicted Functional Partners:
yeats2
YEATS domain containing 2.
      
 0.564
stard7
StAR related lipid transfer domain containing 7.
      
 0.536
rapgef2
Rap guanine nucleotide exchange factor 2.
      
 0.533
ENSPRNP00000028122
Leucine rich repeat containing 9.
      
 0.515
LOC114427972
CNK3/IPCEF1 fusion protein-like.
    
 0.501
ENSPRNP00000012124
annotation not available
    
 0.501
LOC114429120
Connector enhancer of kinase suppressor of ras 3-like.
    
 0.501
cnksr3
CNKSR family member 3.
    
 0.501
cnksr2
Connector enhancer of kinase suppressor of Ras 2.
    
 0.501
ENSPRNP00000042731
annotation not available
    
 0.501
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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