STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trim45Tripartite motif containing 45. (561 aa)    
Predicted Functional Partners:
rps12
Ribosomal protein S12.
    
 0.597
dhx58
DExH-box helicase 58.
    
  0.587
ifih1
Interferon induced with helicase C domain 1.
    
  0.587
rpl35
Ribosomal protein L35.
    
 
 0.586
rps27a
Ribosomal protein S27a.
    
 0.550
gmps
Guanine monophosphate synthase.
    
  0.543
LOC114449080
Apoptosis-associated speck-like protein containing a CARD.
    
  0.530
LOC114448260
Apoptosis-associated speck-like protein containing a CARD.
    
  0.530
sting1
Stimulator of interferon response cGAMP interactor 1.
    
  0.528
pidd1
P53-induced death domain protein 1.
    
  0.522
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.