STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPRNP00000040561Homeobox C4a. (265 aa)    
Predicted Functional Partners:
LOC114438333
Homeobox protein Hox-C5a-like.
   
 
0.943
hoxc6
Homeobox C6.
   
 
0.871
LOC114451513
Homeobox protein Hox-B6b.
   
 
0.858
LOC114439300
Homeobox protein Hox-B6a-like.
   
 
0.858
hoxb5
Homeobox B5.
   
 
0.847
LOC114439296
Homeobox protein Hox-B5a-like.
   
 
0.847
hoxd4
Homeobox D4.
  
 
0.800
HOXA7
Homeobox A7.
   
 
0.790
hoxb4
Homeobox B4.
  
  
0.746
LOC114439299
Homeobox protein Hox-B7-B-like.
   
 
0.731
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.