STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114428603tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like. (662 aa)    
Predicted Functional Partners:
pus1
Pseudouridine synthase 1.
  
 
 0.865
eprs1
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.823
cep152
Centrosomal protein 152.
   
    0.815
ftsj3
FtsJ RNA 2'-O-methyltransferase 3.
  
  
 0.784
nop14
NOP14 nucleolar protein.
   
    0.772
mettl1
Methyltransferase like 1.
  
 
 0.766
ddx56
DEAD-box helicase 56.
  
 
 0.758
trmt61a
tRNA methyltransferase 61A.
   
  
 0.749
wdr4
WD repeat domain 4.
   
 
 0.701
nat10
N-acetyltransferase 10.
  
  
 0.698
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.