STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114434912pre-B-cell leukemia transcription factor 1. (440 aa)    
Predicted Functional Partners:
hoxb1
Homeobox B1.
    
 0.870
meis2
Meis homeobox 2.
   
0.835
LOC114447002
Homeobox protein Meis1.
   
0.835
LOC114438575
Homeobox protein Hox-C1a-like.
   
 0.808
hoxc9
Homeobox C9.
    
 
 0.775
hoxb8
Homeobox B8.
    
 0.768
hoxc8
Homeobox C8.
    
 0.768
hoxb5
Homeobox B5.
    
 0.766
LOC114439296
Homeobox protein Hox-B5a-like.
    
 0.766
pknox2
PBX/knotted 1 homeobox 2.
    
0.722
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.