STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114452641Nck-associated protein 5-like. (1986 aa)    
Predicted Functional Partners:
exosc3
Exosome component 3.
    
 
 0.938
exosc5
Exosome component 5.
   
   0.911
ENDOV
Endonuclease V.
  
 
 0.778
urod
Uroporphyrinogen decarboxylase.
  
 
 0.778
mms19
MMS19 homolog, cytosolic iron-sulfur assembly component.
   
 
 0.661
eprs1
glutamyl-prolyl-tRNA synthetase 1.
  
  
 0.642
exosc6
Exosome component 6.
   
   0.589
exosc4
Exosome component 4.
   
   0.589
trmu
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
  
 0.588
trit1
tRNA isopentenyltransferase 1.
  
  
 0.586
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.