STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114447418Stress-induced-phosphoprotein 1-like. (518 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.871
ENSPRNP00000056581
annotation not available
   
 0.773
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
  0.767
sf3b1
Splicing factor 3b subunit 1.
   
 0.738
sf3b2
Splicing factor 3b subunit 2.
   
 0.729
rps6
Ribosomal protein S6.
    
 0.723
sf3b3
Splicing factor 3b subunit 3.
    
 0.720
sf3b4
Splicing factor 3b subunit 4.
    
 0.717
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.706
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.702
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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