STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
larp7La ribonucleoprotein 7, transcriptional regulator. (562 aa)    
Predicted Functional Partners:
LOC114440329
Protein HEXIM-like.
    
 0.989
LOC114446632
7SK snRNA methylphosphate capping enzyme-like.
    
 0.982
ENSPRNP00000029540
annotation not available
    
 0.982
LOC114431279
7SK snRNA methylphosphate capping enzyme-like.
    
 0.982
cdk9
Cyclin dependent kinase 9.
   
 0.970
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.896
ccnt1
Cyclin T1.
   
 0.830
sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
   
 0.800
lyar
Ly1 antibody reactive.
   
 
 0.799
LOC114431967
cyclin-T2-like.
   
 0.795
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.