STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114428839Serine/threonine-protein phosphatase PP1-beta catalytic subunit-like. (358 aa)    
Predicted Functional Partners:
cpsf2
Cleavage and polyadenylation specific factor 2.
   
 0.948
WDR33
WD repeat domain 33.
   
 0.946
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.946
ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase.
   
 0.944
eif2s1
Eukaryotic translation initiation factor 2 subunit alpha.
   
 0.944
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 0.943
ppp1r12c
Protein phosphatase 1 regulatory subunit 12C.
  
 0.943
ppp1r7
Protein phosphatase 1 regulatory subunit 7.
   
 0.942
LOC114436511
Protein phosphatase 1 regulatory subunit 12B-like.
  
 0.941
fip1l1
Factor interacting with PAPOLA and CPSF1.
    
 0.940
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.