STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114452479DNA topoisomerase 2-alpha-like. (1570 aa)    
Predicted Functional Partners:
smc2
Structural maintenance of chromosomes 2.
   
 
 0.930
spo11
SPO11 initiator of meiotic double stranded breaks.
    
 0.928
smc4
Structural maintenance of chromosomes 4.
   
 
 0.900
ncaph
non-SMC condensin I complex subunit H.
   
 
 0.897
ube2c
Ubiquitin conjugating enzyme E2 C.
   
 0.894
blm
BLM RecQ like helicase.
  
 
 0.863
med6
Mediator complex subunit 6.
    
  0.860
pcna
Proliferating cell nuclear antigen.
  
 
 0.858
med10
Mediator complex subunit 10.
    
  0.846
LOC114452309
Baculoviral IAP repeat-containing protein 5.2-like.
   
  
 0.845
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.