STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114428382Histone H2B 1/2-like. (123 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.891
LOC114447499
Core histone macro-H2A.2.
   
 0.850
LOC114445775
Core histone macro-H2A.1.
   
 0.850
LOC114432609
Lysine-specific demethylase 6A-like.
    
 0.843
ENSPRNP00000050913
Lysine (K)-specific demethylase 6B, b.
    
 0.843
ENSPRNP00000053748
annotation not available
    
 0.843
ENSPRNP00000053787
annotation not available
    
 0.843
kdm6a
Lysine demethylase 6A.
    
 0.843
ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.808
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.804
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.