STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zranb1Zinc finger RANBP2-type containing 1. (711 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
   
  0.910
ubxn7
UBX domain protein 7.
   
   0.885
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.876
traf6
TNF receptor associated factor 6.
    
 0.869
ripk4
Receptor interacting serine/threonine kinase 4.
   
 0.810
apc2
APC regulator of WNT signaling pathway 2.
    
  0.744
tnip1
TNFAIP3 interacting protein 1.
    
 0.731
LOC114453620
TNFAIP3-interacting protein 1-like.
    
 0.731
traf7
TNF receptor associated factor 7.
    
 0.706
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.688
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.