STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114446648Tripartite motif-containing protein 16-like. (259 aa)    
Predicted Functional Partners:
dhx58
DExH-box helicase 58.
    
  0.581
ifih1
Interferon induced with helicase C domain 1.
    
  0.581
gmps
Guanine monophosphate synthase.
    
  0.543
rps27a
Ribosomal protein S27a.
    
  0.526
pidd1
P53-induced death domain protein 1.
    
  0.522
LOC114449080
Apoptosis-associated speck-like protein containing a CARD.
    
  0.516
LOC114448260
Apoptosis-associated speck-like protein containing a CARD.
    
  0.516
ENSPRNP00000003552
annotation not available
    
  0.509
ENSPRNP00000003619
annotation not available
    
  0.509
LOC114445964
Ras-related GTP-binding protein A.
    
  0.509
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.