STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114450496Ras-related protein Rab-18. (205 aa)    
Predicted Functional Partners:
rab3gap1
RAB3 GTPase activating protein catalytic subunit 1.
    
 0.841
rab3gap2
RAB3 GTPase activating non-catalytic protein subunit 2.
     
 0.812
LOC114436367
Rab GDP dissociation inhibitor beta-like.
   
 0.754
LOC114438251
Rab GDP dissociation inhibitor alpha.
   
 0.754
LOC114431925
Rab GDP dissociation inhibitor beta-like.
   
 0.754
chm
CHM Rab escort protein.
     
 0.697
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.691
rabggtb
Rab geranylgeranyltransferase subunit beta.
     
 0.690
ptar1
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.684
rab2a
RAB2A, member RAS oncogene family.
  
0.667
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.