STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPRNP00000055104annotation not available (257 aa)    
Predicted Functional Partners:
mmp9
Matrix metallopeptidase 9.
    
 0.656
LOC114426045
Collagen alpha-2(VI) chain-like.
 
 
 0.445
col6a2
Collagen type VI alpha 2 chain.
 
 
 0.445
LOC114445725
Collagenase 3-like.
    
  0.443
LOC114445726
Collagenase 3-like.
    
  0.443
mmp13
Matrix metallopeptidase 13.
    
  0.443
LOC114444548
Matrix metalloproteinase-20-like.
    
  0.443
LOC114444549
Matrix metalloproteinase-20-like.
    
  0.443
mmp2
Matrix metallopeptidase 2.
    
  0.443
ENSPRNP00000035948
annotation not available
    
 0.435
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.