Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OHU81454.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (295 aa)    
Predicted Functional Partners:
OHU81459.1
Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.999
OHU81455.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.994
OHU83540.1
LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.802
OHU82268.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.771
OHU81953.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.771
OHU85285.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.766
OHU81900.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
  0.742
OHU81968.1
Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.724
OHU83961.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.713
OHU85586.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.701
Your Current Organism:
Helicobacter sp. CLO3
NCBI taxonomy Id: 211
Other names: Campylobacter-like organism 3, H. sp. CLO-3, Helicobacter CLO3, Helicobacter sp. (strain CLO3), Helicobacter sp. CLO-3
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