SDM19044.1 protein (Allokutzneria albata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDM19044.1

Phosphotransferase enzyme family protein. (400 aa)

Predicted Functional Partners:

SDN52378.1

0.928

SDM19055.1

0.923

SDM39922.1

0.873

SDN66833.1

0.873

SDM18956.1

0.821

SDM19001.1

0.796

SDM18984.1

0.785

SDM19019.1

0.777

SDM18973.1

0.774

SDM19077.1

0.773

Your Current Organism:

Allokutzneria albata

NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDM18956.1	SDM18973.1	SAMN04489726_0263	SAMN04489726_0264	Radical SAM superfamily protein.	4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.773
SDM18956.1	SDM18984.1	SAMN04489726_0263	SAMN04489726_0265	Radical SAM superfamily protein.	ABC-2 type transport system ATP-binding protein.	0.777
SDM18956.1	SDM19001.1	SAMN04489726_0263	SAMN04489726_0266	Radical SAM superfamily protein.	ABC-2 type transport system permease protein.	0.776
SDM18956.1	SDM19019.1	SAMN04489726_0263	SAMN04489726_0267	Radical SAM superfamily protein.	ABC-2 type transport system permease protein.	0.776
SDM18956.1	SDM19044.1	SAMN04489726_0263	SAMN04489726_0268	Radical SAM superfamily protein.	Phosphotransferase enzyme family protein.	0.821
SDM18956.1	SDM19055.1	SAMN04489726_0263	SAMN04489726_0269	Radical SAM superfamily protein.	Glycosyl transferases group 1.	0.773
SDM18956.1	SDM19077.1	SAMN04489726_0263	SAMN04489726_0270	Radical SAM superfamily protein.	Sugar or nucleoside kinase, ribokinase family.	0.773
SDM18973.1	SDM18956.1	SAMN04489726_0264	SAMN04489726_0263	4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Radical SAM superfamily protein.	0.773
SDM18973.1	SDM18984.1	SAMN04489726_0264	SAMN04489726_0265	4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	ABC-2 type transport system ATP-binding protein.	0.773
SDM18973.1	SDM19001.1	SAMN04489726_0264	SAMN04489726_0266	4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	ABC-2 type transport system permease protein.	0.774
SDM18973.1	SDM19019.1	SAMN04489726_0264	SAMN04489726_0267	4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	ABC-2 type transport system permease protein.	0.773
SDM18973.1	SDM19044.1	SAMN04489726_0264	SAMN04489726_0268	4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Phosphotransferase enzyme family protein.	0.774
SDM18973.1	SDM19055.1	SAMN04489726_0264	SAMN04489726_0269	4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glycosyl transferases group 1.	0.833
SDM18973.1	SDM19077.1	SAMN04489726_0264	SAMN04489726_0270	4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Sugar or nucleoside kinase, ribokinase family.	0.773
SDM18984.1	SDM18956.1	SAMN04489726_0265	SAMN04489726_0263	ABC-2 type transport system ATP-binding protein.	Radical SAM superfamily protein.	0.777
SDM18984.1	SDM18973.1	SAMN04489726_0265	SAMN04489726_0264	ABC-2 type transport system ATP-binding protein.	4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.773
SDM18984.1	SDM19001.1	SAMN04489726_0265	SAMN04489726_0266	ABC-2 type transport system ATP-binding protein.	ABC-2 type transport system permease protein.	0.960
SDM18984.1	SDM19019.1	SAMN04489726_0265	SAMN04489726_0267	ABC-2 type transport system ATP-binding protein.	ABC-2 type transport system permease protein.	0.959
SDM18984.1	SDM19044.1	SAMN04489726_0265	SAMN04489726_0268	ABC-2 type transport system ATP-binding protein.	Phosphotransferase enzyme family protein.	0.785
SDM18984.1	SDM19055.1	SAMN04489726_0265	SAMN04489726_0269	ABC-2 type transport system ATP-binding protein.	Glycosyl transferases group 1.	0.774