STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM24159.1GAF domain-containing protein. (152 aa)    
Predicted Functional Partners:
SDN67157.1
Signal transduction histidine kinase.
   
 0.921
SDM24139.1
MFS transporter, putative metabolite:H+ symporter.
 
     0.912
SDM24177.1
Imidazolonepropionase.
 
     0.902
SDM24116.1
DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains.
 
    0.867
SDM34481.1
PAS domain S-box-containing protein.
    
 0.779
SDM62716.1
PAS domain S-box-containing protein.
   
 0.774
SDN49187.1
HAMP domain-containing protein.
    
  0.702
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.676
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.574
SDM83187.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
 0.569
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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