STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM27375.1AraC-type DNA-binding protein. (247 aa)    
Predicted Functional Partners:
SDM88819.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.723
SDM27358.1
TIGR03086 family protein.
 
     0.654
SDM27389.1
O-Methyltransferase involved in polyketide biosynthesis.
       0.645
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.594
SDM54832.1
AraC-type DNA-binding protein.
  
     0.583
SDM41924.1
Helix-turn-helix domain-containing protein.
  
   0.576
SDN67157.1
Signal transduction histidine kinase.
     
 0.542
SDM27415.1
DNA-binding transcriptional regulator, MerR family.
       0.536
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.