STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM28866.1L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (477 aa)    
Predicted Functional Partners:
araB
L-ribulokinase.
  
 
 0.973
SDM28783.1
Hypothetical protein.
 
     0.895
SDM28840.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
  
  0.891
SDM28819.1
L-rhamnose isomerase / sugar isomerase.
 
     0.877
SDM28896.1
Rhamnulokinase.
 
 
 0.875
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
  
  0.836
SDM65817.1
L-ribulose 5-phosphate 4-epimerase.
  
 
 0.836
SDN32252.1
L-fuculose 1-phosphate aldolase.
  
 
 0.836
mtnB
Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Belongs to the aldolase class II family. MtnB subfamily.
  
 
 0.697
SDM28634.1
alpha-L-rhamnosidase.
  
     0.581
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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