STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM34984.1Dihydrofolate reductase. (188 aa)    
Predicted Functional Partners:
SDM48097.1
Dihydrofolate reductase.
  
     0.757
SDM19964.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.684
SDM38622.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.684
SDM35002.1
Catechol 2,3-dioxygenase.
 
    0.618
SDM34952.1
ABC transporter.
       0.545
SDM34968.1
Hypothetical protein.
       0.545
SDM34929.1
Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
       0.541
SDM34915.1
Farnesyl-diphosphate farnesyltransferase.
       0.509
SDM55343.1
Helix-turn-helix domain-containing protein.
  
     0.430
SDN22355.1
RibD C-terminal domain-containing protein.
 
     0.413
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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