STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM38686.1Ribosomal-protein-alanine N-acetyltransferase. (171 aa)    
Predicted Functional Partners:
SDM38713.1
Protein of unknown function.
       0.768
SDM88819.1
Glutamate synthase (NADPH/NADH) large chain.
   
 
  0.683
SDN12982.1
Methyltransferase domain-containing protein.
  
     0.606
SDM38661.1
Lysophospholipase L1.
       0.574
SDM38731.1
DNA-binding transcriptional regulator, AcrR family.
       0.543
SDM60106.1
Protein of unknown function.
  
     0.476
SDM17938.1
Helix-turn-helix domain-containing protein.
  
     0.417
SDM38325.1
Helix-turn-helix domain-containing protein.
  
     0.416
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.416
SDN55869.1
Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.414
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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