STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM47304.1RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (170 aa)    
Predicted Functional Partners:
SDN46501.1
Anti-sigma-K factor RskA.
  
 
 0.918
SDM47342.1
ABC-type multidrug transport system, ATPase component.
 
     0.900
SDM47331.1
Hypothetical protein.
   
   0.862
SDM69278.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.811
SDM47364.1
Hypothetical protein.
       0.785
SDM66744.1
RNA polymerase, sigma subunit, ECF family; Manually curated; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.779
SDM52047.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.768
SDM30716.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.762
SDM58695.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.762
SDN28369.1
RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.734
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.