STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM47478.1CsbD-like; Belongs to the UPF0337 (CsbD) family. (67 aa)    
Predicted Functional Partners:
SDM95039.1
Hypothetical protein.
   
    0.579
SDM47495.1
DNA polymerase-3 subunit epsilon.
       0.540
SDN30528.1
ABC-2 type transport system ATP-binding protein.
  
    0.530
SDM54739.1
Sulfofructosephosphate aldolase.
   
    0.503
SDM47454.1
Protein of unknown function.
       0.497
SDM27632.1
Pyridoxamine 5'-phosphate oxidase.
  
    0.494
SDM40736.1
PPOX class probable F420-dependent enzyme, Rv3369 family.
  
    0.494
SDM47876.1
PPOX class probable F420-dependent enzyme.
  
    0.494
SDM56067.1
Pyridoxamine 5'-phosphate oxidase.
  
    0.494
SDM60750.1
PPOX class probable F420-dependent enzyme.
  
    0.494
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.