STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM57290.1DNA-binding transcriptional activator of the SARP family; Manually curated. (906 aa)    
Predicted Functional Partners:
SDN67157.1
Signal transduction histidine kinase.
  
 0.875
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
  0.817
SDM94908.1
Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family.
    
 
 0.733
SDM36862.1
Helix-turn-helix domain-containing protein.
  
  
 0.728
SDM92012.1
Predicted ATPase.
  
   0.728
SDM34341.1
Predicted ATPase.
  
    0.718
SDM26631.1
Non-specific serine/threonine protein kinase.
  
    0.717
SDM73823.1
Non-specific serine/threonine protein kinase.
  
    0.701
SDN04579.1
Predicted ATPase.
 
    0.696
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.689
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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