STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM60024.1Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. (422 aa)    
Predicted Functional Partners:
SDM59990.1
Glyoxylase, beta-lactamase superfamily II.
 
     0.825
SDM59972.1
Polyketide cyclase / dehydrase and lipid transport.
  
    0.775
rpsD
Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
  0.761
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.721
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.718
SDM87405.1
Manually curated.
    
  0.668
SDM86453.1
ATP-dependent helicase HrpA.
    
  0.582
SDN06654.1
ATP-dependent helicase HrpB.
    
  0.582
SDM36069.1
FAD/FMN-containing dehydrogenase.
    
  0.576
SDM59950.1
Pimeloyl-ACP methyl ester carboxylesterase.
    
  0.555
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.