STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM61766.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (220 aa)    
Predicted Functional Partners:
SDN67157.1
Signal transduction histidine kinase.
  
 0.963
SDM61782.1
Signal transduction histidine kinase.
 
  0.955
SDM34481.1
PAS domain S-box-containing protein.
 
 
 0.928
SDN62742.1
Signal transduction histidine kinase.
 
  0.805
SDN19711.1
Signal transduction histidine kinase.
 
  0.795
SDN65468.1
Signal transduction histidine kinase.
  
  0.794
SDN39599.1
Signal transduction histidine kinase.
  
  0.792
SDN49371.1
Signal transduction histidine kinase.
 
  0.781
SDN57486.1
Signal transduction histidine kinase.
 
  0.779
SDN24292.1
Signal transduction histidine kinase.
 
  0.776
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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