STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM63808.1Cyclic nucleotide-binding domain-containing protein. (474 aa)    
Predicted Functional Partners:
SDN67157.1
Signal transduction histidine kinase.
   
 0.930
SDM88819.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.917
SDM25032.1
Acyl transferase domain-containing protein.
    
 0.838
SDM37095.1
Acyl transferase domain-containing protein.
    
 0.838
SDM72357.1
Adenylate cyclase, class 3.
   
 0.831
SDM63776.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
 
     0.810
SDM60827.1
Germacradienol/geosmin synthase.
 
  
  0.797
SDM85037.1
Terpene synthase family, metal binding domain.
 
  
  0.797
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.777
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.769
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.