STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM71083.1Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. (266 aa)    
Predicted Functional Partners:
SDN63505.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.919
SDM71101.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
 
 
 0.913
SDN15259.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.875
SDM71141.1
ADP-ribosylglycohydrolase.
 
     0.866
SDM71158.1
ADP-ribosylglycohydrolase.
 
     0.862
SDN08406.1
Acyl dehydratase.
 
 
 0.849
SDM47681.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
    
 0.829
SDM71243.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
     0.809
SDM71208.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
 
     0.800
SDM74114.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
 
 0.791
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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