Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM80131.1 | SDM80149.1 | SAMN04489726_3426 | SAMN04489726_3427 | Serine protease, subtilisin family; Belongs to the peptidase S8 family. | HAD-superfamily subfamily IB hydrolase, TIGR01490. | 0.608 |
SDM80131.1 | SDM98443.1 | SAMN04489726_3426 | SAMN04489726_4322 | Serine protease, subtilisin family; Belongs to the peptidase S8 family. | Hypothetical protein. | 0.491 |
SDM80131.1 | SDN04420.1 | SAMN04489726_3426 | SAMN04489726_4619 | Serine protease, subtilisin family; Belongs to the peptidase S8 family. | Concanavalin A-like lectin/glucanases superfamily protein. | 0.491 |
SDM80131.1 | SDN57624.1 | SAMN04489726_3426 | SAMN04489726_7243 | Serine protease, subtilisin family; Belongs to the peptidase S8 family. | Cytochrome oxidase assembly protein ShyY1. | 0.407 |
SDM80131.1 | secY | SAMN04489726_3426 | SAMN04489726_5130 | Serine protease, subtilisin family; Belongs to the peptidase S8 family. | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.407 |
SDM80149.1 | SDM80131.1 | SAMN04489726_3427 | SAMN04489726_3426 | HAD-superfamily subfamily IB hydrolase, TIGR01490. | Serine protease, subtilisin family; Belongs to the peptidase S8 family. | 0.608 |
SDM98443.1 | SDM80131.1 | SAMN04489726_4322 | SAMN04489726_3426 | Hypothetical protein. | Serine protease, subtilisin family; Belongs to the peptidase S8 family. | 0.491 |
SDN04420.1 | SDM80131.1 | SAMN04489726_4619 | SAMN04489726_3426 | Concanavalin A-like lectin/glucanases superfamily protein. | Serine protease, subtilisin family; Belongs to the peptidase S8 family. | 0.491 |
SDN57624.1 | SDM80131.1 | SAMN04489726_7243 | SAMN04489726_3426 | Cytochrome oxidase assembly protein ShyY1. | Serine protease, subtilisin family; Belongs to the peptidase S8 family. | 0.407 |
SDN57624.1 | secY | SAMN04489726_7243 | SAMN04489726_5130 | Cytochrome oxidase assembly protein ShyY1. | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.825 |
secY | SDM80131.1 | SAMN04489726_5130 | SAMN04489726_3426 | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | Serine protease, subtilisin family; Belongs to the peptidase S8 family. | 0.407 |
secY | SDN57624.1 | SAMN04489726_5130 | SAMN04489726_7243 | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | Cytochrome oxidase assembly protein ShyY1. | 0.825 |