STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM88459.1D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4). (515 aa)    
Predicted Functional Partners:
SDN33959.1
D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4).
  
  
 
0.912
SDN33297.1
CubicO group peptidase, beta-lactamase class C family.
  
  
 0.911
SDN41406.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
     
 0.845
SDN41428.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6).
     
 0.845
SDM48708.1
Muramoyltetrapeptide carboxypeptidase.
 
   
 0.607
SDM48475.1
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases-containing protein.
     
 0.568
SDM88481.1
Chitinase family 18.
       0.535
SDN52355.1
IgA Peptidase M64.
  
  
 0.534
SDN33981.1
Putative hydrolase/uncharacterized protein, coenzyme F420 biosynthesis associated.
  
  
 0.524
SDM17130.1
Ankyrin repeat.
    
   0.513
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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