STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM91985.1Hypothetical protein. (336 aa)    
Predicted Functional Partners:
SDM92002.1
Protocatechuate 3,4-dioxygenase beta subunit.
       0.773
SDM92012.1
Predicted ATPase.
       0.628
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.533
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.502
SDN53199.1
Subtilisin inhibitor-like; Belongs to the protease inhibitor I16 (SSI) family.
  
 
   0.489
SDM17247.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
   
   0.464
SDM45997.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family; Manually curated.
  
     0.420
SDN11531.1
Putative zinc-finger.
   
   0.419
SDN16766.1
Protein of unknown function.
   
   0.419
SDN45139.1
Mycothiol system anti-sigma-R factor.
   
   0.419
Your Current Organism:
Allokutzneria albata
NCBI taxonomy Id: 211114
Other names: A. albata, ATCC 55061, DSM 44149, JCM 9917, Kibdelosporangium albatum, NBRC 101910, NRRL B-24461, strain R761-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.